Molecular Biology and Evolution

Letters

Get checked abstract David Posada

jModelTest: Phylogenetic Model Averaging
MBE Advance Access published on April 8, 2008
Mol Biol Evol 2008 25: 1253-1256; doi:10.1093/molbev/msn083 [Abstract] [Full Text] [PDF] [Request Permissions]  

Research Articles

Get checked abstract Mark A. Chapman, James H. Leebens-Mack, and John M. Burke

Positive Selection and Expression Divergence Following Gene Duplication in the Sunflower CYCLOIDEA Gene Family
MBE Advance Access published on April 3, 2008
Mol Biol Evol 2008 25: 1260-1273; doi:10.1093/molbev/msn001 [Abstract] [Full Text] [PDF] [Request Permissions]  

Get checked abstract Supriya V. Kadam, Sigrun Wegener-Feldbrügge, Lotte Søgaard-Andersen, and Gregory J. Velicer

Novel Transcriptome Patterns Accompany Evolutionary Restoration of Defective Social Development in the Bacterium Myxococcus xanthus
MBE Advance Access published on April 2, 2008
Mol Biol Evol 2008 25: 1274-1281; doi:10.1093/molbev/msn076 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract David F. Soria-Hernanz, John M. Braverman, and Matthew B. Hamilton

Parallel Rate Heterogeneity in Chloroplast and Mitochondrial Genomes of Brazil Nut Trees (Lecythidaceae) Is Consistent with Lineage Effects
MBE Advance Access published on April 2, 2008
Mol Biol Evol 2008 25: 1282-1296; doi:10.1093/molbev/msn074 [Abstract] [Full Text] [PDF] [Request Permissions]  

Get checked abstract Claudio H. Slamovits and Patrick J. Keeling

Plastid-Derived Genes in the Nonphotosynthetic Alveolate Oxyrrhis marina
MBE Advance Access published on April 2, 2008
Mol Biol Evol 2008 25: 1297-1306; doi:10.1093/molbev/msn075 [Abstract] [Full Text] [PDF] [Request Permissions]  

Get checked abstract Si Quang Le and Olivier Gascuel

An Improved General Amino Acid Replacement Matrix
MBE Advance Access published on March 26, 2008
Mol Biol Evol 2008 25: 1307-1320; doi:10.1093/molbev/msn067 [Abstract] [Full Text] [PDF] [Request Permissions]  

Get checked abstract André M. Comeau and Henry M. Krisch

The Capsid of the T4 Phage Superfamily: The Evolution, Diversity, and Structure of Some of the Most Prevalent Proteins in the Biosphere
MBE Advance Access published on April 7, 2008
Mol Biol Evol 2008 25: 1321-1332; doi:10.1093/molbev/msn080 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Sutada Mungpakdee, Hee-Chan Seo, Anna Rita Angotzi, Xianjun Dong, Altuna Akalin, and Daniel Chourrout

Differential Evolution of the 13 Atlantic Salmon Hox Clusters
MBE Advance Access published on April 18, 2008
Mol Biol Evol 2008 25: 1333-1343; doi:10.1093/molbev/msn097 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Shigeki Nakagome, Jill Pecon-Slattery, and Ryuichi Masuda

Unequal Rates of Y Chromosome Gene Divergence during Speciation of the Family Ursidae
MBE Advance Access published on April 9, 2008
Mol Biol Evol 2008 25: 1344-1356; doi:10.1093/molbev/msn086 [Abstract] [Full Text] [PDF] [Request Permissions]  

Get checked abstract Xinjiang Cai

Unicellular Ca²⁺ Signaling ‘Toolkit’ at the Origin of Metazoa
MBE Advance Access published on April 2, 2008
Mol Biol Evol 2008 25: 1357-1361; doi:10.1093/molbev/msn077 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Manfred Kayser, Ying Choi, Mannis van Oven, Stefano Mona, Silke Brauer, Ronald J. Trent, Dagwin Suarkia, Wulf Schiefenhövel, and Mark Stoneking

The Impact of the Austronesian Expansion: Evidence from mtDNA and Y Chromosome Diversity in the Admiralty Islands of Melanesia
MBE Advance Access published on April 3, 2008
Mol Biol Evol 2008 25: 1362-1374; doi:10.1093/molbev/msn078 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract John Paul Foxe, Vaqaar-un-Nisa Dar, Honggang Zheng, Magnus Nordborg, Brandon S. Gaut, and Stephen I. Wright

Selection on Amino Acid Substitutions in Arabidopsis
MBE Advance Access published on April 4, 2008
Mol Biol Evol 2008 25: 1375-1383; doi:10.1093/molbev/msn079 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Benjamin N. Sacks, Danika L. Bannasch, Bruno B. Chomel, and Holly B. Ernest

Coyotes Demonstrate How Habitat Specialization by Individuals of a Generalist Species Can Diversify Populations in a Heterogeneous Ecoregion
MBE Advance Access published on April 7, 2008
Mol Biol Evol 2008 25: 1384-1394; doi:10.1093/molbev/msn082 [Abstract] [Full Text] [PDF] [Request Permissions]  

Get checked abstract Kenji K. Kojima and Minoru Kanehisa

Systematic Survey for Novel Types of Prokaryotic Retroelements Based on Gene Neighborhood and Protein Architecture
MBE Advance Access published on April 7, 2008
Mol Biol Evol 2008 25: 1395-1404; doi:10.1093/molbev/msn081 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Mareike Rüdinger, Monika Polsakiewicz, and Volker Knoop

Organellar RNA Editing and Plant-Specific Extensions of Pentatricopeptide Repeat Proteins in Jungermanniid but not in Marchantiid Liverworts
MBE Advance Access published on April 9, 2008
Mol Biol Evol 2008 25: 1405-1414; doi:10.1093/molbev/msn084 [Abstract] [Full Text] [PDF] [Request Permissions]  

Get checked abstract Corrinne E. Grover, Yeisoo Yu, Rod A. Wing, Andrew H. Paterson, and Jonathan F. Wendel

A Phylogenetic Analysis of Indel Dynamics in the Cotton Genus
MBE Advance Access published on April 9, 2008
Mol Biol Evol 2008 25: 1415-1428; doi:10.1093/molbev/msn085 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Daniela Brites, Seanna McTaggart, Krystalynne Morris, Jobriah Anderson, Kelley Thomas, Isabelle Colson, Thomas Fabbro, Tom J. Little, Dieter Ebert, and Louis Du Pasquier

The Dscam Homologue of the Crustacean Daphnia Is Diversified by Alternative Splicing Like in Insects
MBE Advance Access published on April 9, 2008
Mol Biol Evol 2008 25: 1429-1439; doi:10.1093/molbev/msn087 [Abstract] [Full Text] [PDF] [Request Permissions]  

Get checked abstract Andrew J. Heidel and Gernot Glöckner

Mitochondrial Genome Evolution in the Social Amoebae
MBE Advance Access published on April 15, 2008
Mol Biol Evol 2008 25: 1440-1450; doi:10.1093/molbev/msn088 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Chuanzhu Fan, Ying Chen, and Manyuan Long

Recurrent Tandem Gene Duplication Gave Rise to Functionally Divergent Genes in Drosophila
MBE Advance Access published on April 11, 2008
Mol Biol Evol 2008 25: 1451-1458; doi:10.1093/molbev/msn089 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Vladimir N. Minin, Erik W. Bloomquist, and Marc A. Suchard

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics
MBE Advance Access published on April 11, 2008
Mol Biol Evol 2008 25: 1459-1471; doi:10.1093/molbev/msn090 [Abstract] [Full Text] [PDF] [Request Permissions]  

Get checked abstract Tanja Slotte, Huirun Huang, Martin Lascoux, and Alf Ceplitis

Polyploid Speciation Did Not Confer Instant Reproductive Isolation in Capsella (Brassicaceae)
MBE Advance Access published on April 15, 2008
Mol Biol Evol 2008 25: 1472-1481; doi:10.1093/molbev/msn092 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Verónica Garrocho-Villegas and Raúl Arredondo-Peter

Molecular Cloning and Characterization of a Moss (Ceratodon purpureus) Nonsymbiotic Hemoglobin Provides Insight into the Early Evolution of Plant Nonsymbiotic Hemoglobins
MBE Advance Access published on April 16, 2008
Mol Biol Evol 2008 25: 1482-1487; doi:10.1093/molbev/msn096 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Cadhla Ramsden, Fernando L. Melo, Luiz. M. Figueiredo, Edward C. Holmes, Paolo M.A. Zanotto, and the VGDN Consortium

High Rates of Molecular Evolution in Hantaviruses
MBE Advance Access published on April 15, 2008
Mol Biol Evol 2008 25: 1488-1492; doi:10.1093/molbev/msn093 [Abstract] [Full Text] [PDF] [Request Permissions]  

Get checked abstract Rui Zhang, Yin-Qiu Wang, and Bing Su

Molecular Evolution of a Primate-Specific microRNA Family
MBE Advance Access published on April 15, 2008
Mol Biol Evol 2008 25: 1493-1502; doi:10.1093/molbev/msn094 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Ligia M. Mateiu and Bruce H. Rannala

Bayesian Inference of Errors in Ancient DNA Caused by Postmortem Degradation
MBE Advance Access published on April 16, 2008
Mol Biol Evol 2008 25: 1503-1511; doi:10.1093/molbev/msn095 [Abstract] [Full Text] [PDF] [Request Permissions]  

Get checked abstract Nicole Gruenheit, Peter J. Lockhart, Mike Steel, and William Martin

Difficulties in Testing for Covarion-Like Properties of Sequences under the Confounding Influence of Changing Proportions of Variable Sites
MBE Advance Access published on April 18, 2008
Mol Biol Evol 2008 25: 1512-1520; doi:10.1093/molbev/msn098 [Abstract] [Full Text] [PDF] [Request Permissions]  

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